maybe a sensor is going out, If its intermediate i doubt it would be the mapping. I work on diesels not motorcycles, so I'm sure someone else on here is more qualified to answer your question. But if it was mine, I'd check for any codes first, and if there aren't any wait till it does it, and then check right away.
by placing a jumper wire in the diagnostics plug in the diagnostic plug it will show you the codes in the display, but I forget which wires they are, its been so long since I've done it. found that out from the bazzaz.
maybe check to make sure that your butterfly valves are still in sync with eachother. much other then that I think if it is a sensor problem of some kind the diagnostic codes should tell you.