yeah I hear ya'll on the ports. I got lazy because this was driving me crazy. I was getting ready to put the tbs on and thought I would snap a quick pic to post.
Anyway good news:
Took it out today and bike is running fine. Took the 16t off the front for a 17t sprocket to slow things down and put more load on the bike and to find the "problem rpm". I believe it was just the tune or the cam pin. The only other thing I found was the common hot(red/yellow) wires to the injectors were exposed at the junction between cylinders 1 and 2 and could have been arcing. Got those sealed back up and also put the air filter back in. Bike had one small hick up in 4th gear but it just drove through it. So I cut the nitrous map on and it ran fine. Made pulls in 3,4,5,6. Every gear pulled great. Hadn't even thought about how cold it was leaning it out. That's why I put the filter back in. But rode around a good hour and ran fine. So I am very happy. Now I got to get the 1000 done.
Thanks for everybodies help.